STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMCD1LIM and cysteine-rich domains protein 1. (426 aa)    
Predicted Functional Partners:
GATA6
Transcription factor GATA-6.
    
 0.743
GATA5
Transcription factor GATA-5.
    
 0.605
GATA4
Transcription factor GATA-4.
    
 0.605
GATA4_0
Transcription factor GATA-4.
    
 0.605
VSTM2B
V-set and transmembrane domain-containing protein 2B.
      
 0.564
GATA1
Erythroid transcription factor-like.
    
 0.525
MRPS10
28S ribosomal protein S10, mitochondrial.
      
 0.524
DVL3
Segment polarity protein dishevelled DVL-3.
    
 0.510
DVL1
Segment polarity protein dishevelled DVL-1.
    
 0.510
VANGL1
Vang-like protein.
    
 0.416
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.