STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBD5Methyl-CpG-binding domain protein 5. (1711 aa)    
Predicted Functional Partners:
UNC79
Protein unc-79.
    
 0.777
BAP1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.640
HCFC1
Host cell factor C1.
    
 0.637
HCFC2
Host cell factor 2.
    
 0.637
KDM1B
Lysine-specific histone demethylase 1B.
    
 0.616
LYPD6B
Ly6/PLAUR domain-containing protein 6B.
    
 0.547
LOC110478774
E3 SUMO-protein ligase RanBP2.
    
 0.540
FOXK2
Forkhead box protein K2.
    
 0.502
FOXK1
Forkhead box protein K1.
    
 0.502
KDM6A
Lysine-specific demethylase 6A.
   
 0.457
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.