Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CPQCarboxypeptidase Q. (492 aa)    
Predicted Functional Partners:
MTFR1
Mitochondrial fission regulator 1.
     
 0.739
ARG2
Arginase.
   
 
 0.724
TSPAN4
Tetraspanin.
   
 
 0.717
CRCP
DNA-directed RNA polymerase III subunit RPC9.
      
 0.695
LAPTM4B
Lysosomal-associated transmembrane protein 4B.
    
 
 0.689
NT5DC1
5'-nucleotidase domain-containing protein 1.
      
 0.660
LRRTM4
Leucine-rich repeat transmembrane neuronal protein 4.
     
 0.600
KCNS1
Potassium voltage-gated channel subfamily S member 1; Belongs to the potassium channel family.
    
 
 0.599
BCL2L10
Bcl-2-like protein 10.
   
  
 0.593
PIGK
GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.
      
 0.589
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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