STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NPAS3Neuronal PAS domain-containing protein 3. (944 aa)    
Predicted Functional Partners:
ARNT
Aryl hydrocarbon receptor nuclear translocator.
    
 0.844
ARNT2
Aryl hydrocarbon receptor nuclear translocator 2.
    
 0.844
VHL
Von Hippel-Lindau disease tumor suppressor.
    
 0.758
UBXN7
UBX domain-containing protein 7.
    
  0.755
EGLN3
Egl nine 3.
    
 0.713
EGLN1
Egl nine 1.
    
 0.713
ELOB
Transcription elongation factor B polypeptide 2.
    
 0.672
POU3F1
POU domain protein.
    
 0.645
CUL2
Cullin-2; Belongs to the cullin family.
    
 0.643
ELOC
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.639
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.