STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110481744DNA excision repair protein ERCC-1. (331 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
   
 0.999
LOC110477051
Fanconi anemia group M protein.
   
 0.999
ERCC4
DNA repair endonuclease XPF.
   
 0.998
XPA
DNA repair protein complementing XP-A cells.
    
 0.981
FANCL
E3 ubiquitin-protein ligase FANCL.
    
 0.979
FANCG
Fanconi anemia group G protein.
    
 0.979
FANCB
Fanconi anemia group B protein.
    
 0.974
SLX4
Structure-specific endonuclease subunit SLX4.
   
 0.967
FANCA
Fanconi anemia group A protein.
   
 0.888
NARS1
Asparagine--tRNA ligase, cytoplasmic.
   
 0.875
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.