Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SMDT1Essential MCU regulator, mitochondrial. (97 aa)    
Predicted Functional Partners:
MICU1
Calcium uptake protein 1, mitochondrial.
    
 0.997
MICU2
Calcium uptake protein 2, mitochondrial.
    
 0.990
MCUB
Calcium uniporter regulatory subunit MCUb, mitochondrial.
    
 0.982
MCU
Calcium uniporter protein, mitochondrial.
    
 0.981
MICU3
Calcium uptake protein 3, mitochondrial.
    
 0.979
ATP5F1D
ATP synthase subunit delta, mitochondrial.
   
    0.895
AFG3L2
AFG3-like protein 2.
     
 0.869
SPG7
Paraplegin.
     
 0.852
EDF1
Endothelial differentiation-related factor 1.
   
    0.760
DCTN3
Dynactin subunit 3.
   
  
 0.728
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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