STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR13WD repeat-containing protein 13. (207 aa)    
Predicted Functional Partners:
UNC79
Protein unc-79.
    
 0.777
TBC1D25
TBC1 domain family member 25.
      
 0.551
LOC110482651
Testis-specific Y-encoded-like protein 2; Belongs to the nucleosome assembly protein (NAP) family.
    
 
 0.535
LOC110478774
E3 SUMO-protein ligase RanBP2.
    
 0.522
SMIM20
Small integral membrane protein 20.
      
 0.520
KDM6A
Lysine-specific demethylase 6A.
    
 0.456
KDM6B
Lysine-specific demethylase 6B.
    
 0.456
RNF34
E3 ubiquitin-protein ligase RNF34.
      
 0.445
RBBP5
Retinoblastoma-binding protein 5.
    
 0.417
ASH2L
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.415
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.