Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADGRF5Putative G-protein coupled receptor 116; Belongs to the G-protein coupled receptor 2 family. (1348 aa)    
Predicted Functional Partners:
ENSLSDP00000017707
annotation not available
   
 
 0.768
PTPRB
Receptor-type tyrosine-protein phosphatase beta.
   
 
 0.768
SFTPC
LOW QUALITY PROTEIN: pulmonary surfactant-associated protein C.
   
 
 0.693
CDH5
Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.637
ENSLSDP00000023541
annotation not available
   
 
  0.627
MUC1
Mucin-1.
   
  
 0.569
LOC110484187
Fibronectin type-III domain-containing protein.
   
  
 0.568
HEG1
Protein HEG 1.
      
 0.535
EMCN
Endomucin.
   
  
 0.531
SCTR
Secretin receptor.
   
  
 0.520
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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