Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TBC1D25TBC1 domain family member 25. (518 aa)    
Predicted Functional Partners:
GABARAPL2
Gamma-aminobutyric acid receptor-associated protein-like 2.
   
 0.939
GABARAP
Gamma-aminobutyric acid receptor-associated protein.
   
 0.846
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.846
RAB33B
Ras-related protein Rab-33B.
     
 0.734
ENSLSDP00000016006
Ras-related protein Rab-33B.
     
 0.734
RAB9A
Ras-related protein Rab-9A.
   
 0.700
RAB9B
Ras-related protein Rab-9B.
   
 0.700
WDR13
WD repeat-containing protein 13.
   
  
 0.690
MAP1LC3A
Microtubule-associated proteins 1A/1B light chain 3A.
   
 0.678
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.678
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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