Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)    
Predicted Functional Partners:
NOP56
Nucleolar protein 56.
   
 0.999
NOP58
Nucleolar protein 58.
   
 0.999
UTP15
U3 small nucleolar RNA-associated protein 15.
   
 0.996
RRP9
U3 small nucleolar RNA-interacting protein 2.
   
 0.994
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.977
LSM7
U6 snRNA-associated Sm-like protein LSm7.
   
 0.976
PPIH
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.974
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.970
UTP4
Cirhin.
   
 0.964
NOP10
H/ACA ribonucleoprotein complex subunit 3.
   
 0.962
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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