STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRORPMitochondrial ribonuclease P protein 3. (588 aa)    
Predicted Functional Partners:
TRMT10C
Mitochondrial ribonuclease P protein 1.
   
 0.971
FDFT1
Squalene synthase.
   
 
 0.686
GAPDH
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.642
SHPK
Sedoheptulokinase.
      
 0.612
POP5
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
      
 0.584
NDUFAF6
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6.
   
 
 0.584
PIGZ
Mannosyltransferase.
      
 0.583
TRMT10B
tRNA methyltransferase 10 B.
   
 0.577
TRMT10A
tRNA methyltransferase 10 A.
   
 0.577
PDCD11
Protein RRP5.
  
    0.558
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.