Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPL1939S ribosomal protein L19, mitochondrial. (273 aa)    
Predicted Functional Partners:
MRPL9
39S ribosomal protein L9, mitochondrial.
   
 0.994
MRPL12
39S ribosomal protein L12, mitochondrial.
  
 0.993
MRPL21
39S ribosomal protein L21, mitochondrial.
  
 0.991
MRPL20
39S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family.
  
 0.990
MRPL17
39S ribosomal protein L17, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
  
 0.990
MRPL32
39S ribosomal protein L32, mitochondrial.
  
 0.990
MRPS9
28S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.989
MRPS16
28S ribosomal protein S16, mitochondrial.
  
 
 0.988
MRPL27
39S ribosomal protein L27, mitochondrial.
  
 
 0.988
MRPL41
39S ribosomal protein L41, mitochondrial.
   
 0.986
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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