STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF5APHD finger-like domain-containing protein 5A. (110 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3B subunit 1.
   
 0.999
SF3B6
Splicing factor 3B subunit 6.
   
 0.999
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
SF3B3
Splicing factor 3B subunit 3.
   
 0.999
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.997
SF3B2
Splicing factor 3B subunit 2.
    
 0.995
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.995
SF3B4
Splicing factor 3B subunit 4.
    
 0.995
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 0.994
SF3A2
Splicing factor 3A subunit 2.
    
 0.993
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.