Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TEFTranscription factor VBP. (317 aa)    
Predicted Functional Partners:
COX5A
Cytochrome c oxidase subunit 5A, mitochondrial.
   
 0.730
PER2
Period circadian 2.
   
 0.721
LOC110482504
Cytochrome c oxidase subunit 7C, mitochondrial.
   
 0.697
NR1D2
Nuclear receptor subfamily 1 group D member 2.
   
 0.697
LOC110474501
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial.
   
 0.674
NPAS2
Neuronal PAS domain-containing protein 2.
    
 0.667
CRY1
Cryptochrome-1.
   
  
 0.627
MT-CO2
Mitochondrially encoded cytochrome c oxidase II.
    
  0.606
ARNTL
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
 0.597
GATC
Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family.
   
 0.593
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.