Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDK13Cyclin-dependent kinase 13. (1476 aa)    
Predicted Functional Partners:
CCNK
Cyclin-K; Belongs to the cyclin family.
   
 0.965
LOC110471003
Cyclin-dependent kinase 7.
   
0.935
SUPT5H
Transcription elongation factor SPT5.
    
 0.920
CDK9
Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.
    
 0.895
CCNT1
Cyclin-T1; Belongs to the cyclin family.
   
 0.848
CCNT2
Cyclin-T2; Belongs to the cyclin family.
   
 0.846
CCNH
Cyclin-H; Belongs to the cyclin family.
    
 0.845
MNAT1
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
    
 0.823
ENSLSDP00000000451
annotation not available
    
 0.812
LOC110475048
General transcription factor IIH subunit.
     
  0.799
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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