CFAP77 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CFAP77

Uncharacterized protein C9orf171. (275 aa)

Predicted Functional Partners:

FAM183A

0.948

CUNH5orf49

0.851

WDR90

0.845

SPAG8

0.819

EFHC2

0.814

ENKUR

0.775

PACRG

0.749

SDHAF2

0.742

PACRGL

0.706

SPACA9

0.703

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CFAP77	CUNH5orf49	ENSLSDP00000003235	ENSLSDP00000022459	Uncharacterized protein C9orf171.	Uncharacterized protein C5orf49.	0.851
CFAP77	EFHC2	ENSLSDP00000003235	ENSLSDP00000009032	Uncharacterized protein C9orf171.	EF-hand domain-containing family member C2.	0.814
CFAP77	ENKUR	ENSLSDP00000003235	ENSLSDP00000019584	Uncharacterized protein C9orf171.	Enkurin.	0.775
CFAP77	FAM183A	ENSLSDP00000003235	ENSLSDP00000016544	Uncharacterized protein C9orf171.	Protein FAM183A.	0.948
CFAP77	PACRG	ENSLSDP00000003235	ENSLSDP00000005986	Uncharacterized protein C9orf171.	Parkin coregulated gene protein.	0.749
CFAP77	PACRGL	ENSLSDP00000003235	ENSLSDP00000010149	Uncharacterized protein C9orf171.	PACRG-like protein.	0.706
CFAP77	SDHAF2	ENSLSDP00000003235	ENSLSDP00000005229	Uncharacterized protein C9orf171.	Succinate dehydrogenase assembly factor 2, mitochondrial; Plays an essential role in the assembly of succinate dehydrogenase (SDH), an enzyme complex (also referred to as respiratory complex II) that is a component of both the tricarboxylic acid (TCA) cycle and the mitochondrial electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SDHA of the SDH catalytic dimer.	0.742
CFAP77	SPACA9	ENSLSDP00000003235	ENSLSDP00000003257	Uncharacterized protein C9orf171.	Uncharacterized protein C9orf9.	0.703
CFAP77	SPAG8	ENSLSDP00000003235	ENSLSDP00000019024	Uncharacterized protein C9orf171.	Uncharacterized protein.	0.819
CFAP77	WDR90	ENSLSDP00000003235	ENSLSDP00000002817	Uncharacterized protein C9orf171.	WD repeat-containing protein 90.	0.845
CUNH5orf49	CFAP77	ENSLSDP00000022459	ENSLSDP00000003235	Uncharacterized protein C5orf49.	Uncharacterized protein C9orf171.	0.851
CUNH5orf49	EFHC2	ENSLSDP00000022459	ENSLSDP00000009032	Uncharacterized protein C5orf49.	EF-hand domain-containing family member C2.	0.834
CUNH5orf49	ENKUR	ENSLSDP00000022459	ENSLSDP00000019584	Uncharacterized protein C5orf49.	Enkurin.	0.845
CUNH5orf49	FAM183A	ENSLSDP00000022459	ENSLSDP00000016544	Uncharacterized protein C5orf49.	Protein FAM183A.	0.968
CUNH5orf49	PACRG	ENSLSDP00000022459	ENSLSDP00000005986	Uncharacterized protein C5orf49.	Parkin coregulated gene protein.	0.717
CUNH5orf49	PACRGL	ENSLSDP00000022459	ENSLSDP00000010149	Uncharacterized protein C5orf49.	PACRG-like protein.	0.585
CUNH5orf49	SDHAF2	ENSLSDP00000022459	ENSLSDP00000005229	Uncharacterized protein C5orf49.	Succinate dehydrogenase assembly factor 2, mitochondrial; Plays an essential role in the assembly of succinate dehydrogenase (SDH), an enzyme complex (also referred to as respiratory complex II) that is a component of both the tricarboxylic acid (TCA) cycle and the mitochondrial electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SDHA of the SDH catalytic dimer.	0.620
CUNH5orf49	SPACA9	ENSLSDP00000022459	ENSLSDP00000003257	Uncharacterized protein C5orf49.	Uncharacterized protein C9orf9.	0.777
CUNH5orf49	SPAG8	ENSLSDP00000022459	ENSLSDP00000019024	Uncharacterized protein C5orf49.	Uncharacterized protein.	0.732
CUNH5orf49	WDR90	ENSLSDP00000022459	ENSLSDP00000002817	Uncharacterized protein C5orf49.	WD repeat-containing protein 90.	0.716