BRMS1L protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BRMS1L

Breast cancer metastasis-suppressor 1-like protein. (323 aa)

Predicted Functional Partners:

ING2

0.954

ARID4B

0.939

ARID4A

0.927

SAP30

0.904

SAP30L

0.904

ING1

0.901

SINHCAF

0.885

SUDS3

0.879

RBBP7

0.853

RBBP4

0.853

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSLSDP00000016845	ENSLSDP00000023019	AT-rich interactive domain-containing protein 4A.	AT-rich interactive domain-containing protein 4B.	0.737
ARID4A	BRMS1L	ENSLSDP00000016845	ENSLSDP00000003239	AT-rich interactive domain-containing protein 4A.	Breast cancer metastasis-suppressor 1-like protein.	0.927
ARID4A	ING1	ENSLSDP00000016845	ENSLSDP00000010289	AT-rich interactive domain-containing protein 4A.	Inhibitor of growth protein.	0.650
ARID4A	ING2	ENSLSDP00000016845	ENSLSDP00000013392	AT-rich interactive domain-containing protein 4A.	Inhibitor of growth protein.	0.650
ARID4A	RBBP4	ENSLSDP00000016845	ENSLSDP00000006151	AT-rich interactive domain-containing protein 4A.	Histone-binding protein RBBP4.	0.919
ARID4A	RBBP7	ENSLSDP00000016845	ENSLSDP00000000959	AT-rich interactive domain-containing protein 4A.	Histone-binding protein RBBP7.	0.919
ARID4A	SAP30	ENSLSDP00000016845	ENSLSDP00000013590	AT-rich interactive domain-containing protein 4A.	Histone deacetylase complex subunit SAP30.	0.876
ARID4A	SAP30L	ENSLSDP00000016845	ENSLSDP00000013862	AT-rich interactive domain-containing protein 4A.	Histone deacetylase complex subunit SAP30L-B.	0.876
ARID4A	SINHCAF	ENSLSDP00000016845	ENSLSDP00000011264	AT-rich interactive domain-containing protein 4A.	SIN3-HDAC complex-associated factor.	0.734
ARID4A	SUDS3	ENSLSDP00000016845	ENSLSDP00000004429	AT-rich interactive domain-containing protein 4A.	Sin3 histone deacetylase corepressor complex component SDS3.	0.946
ARID4B	ARID4A	ENSLSDP00000023019	ENSLSDP00000016845	AT-rich interactive domain-containing protein 4B.	AT-rich interactive domain-containing protein 4A.	0.737
ARID4B	BRMS1L	ENSLSDP00000023019	ENSLSDP00000003239	AT-rich interactive domain-containing protein 4B.	Breast cancer metastasis-suppressor 1-like protein.	0.939
ARID4B	ING1	ENSLSDP00000023019	ENSLSDP00000010289	AT-rich interactive domain-containing protein 4B.	Inhibitor of growth protein.	0.881
ARID4B	ING2	ENSLSDP00000023019	ENSLSDP00000013392	AT-rich interactive domain-containing protein 4B.	Inhibitor of growth protein.	0.909
ARID4B	RBBP4	ENSLSDP00000023019	ENSLSDP00000006151	AT-rich interactive domain-containing protein 4B.	Histone-binding protein RBBP4.	0.923
ARID4B	RBBP7	ENSLSDP00000023019	ENSLSDP00000000959	AT-rich interactive domain-containing protein 4B.	Histone-binding protein RBBP7.	0.923
ARID4B	SAP30	ENSLSDP00000023019	ENSLSDP00000013590	AT-rich interactive domain-containing protein 4B.	Histone deacetylase complex subunit SAP30.	0.921
ARID4B	SAP30L	ENSLSDP00000023019	ENSLSDP00000013862	AT-rich interactive domain-containing protein 4B.	Histone deacetylase complex subunit SAP30L-B.	0.921
ARID4B	SINHCAF	ENSLSDP00000023019	ENSLSDP00000011264	AT-rich interactive domain-containing protein 4B.	SIN3-HDAC complex-associated factor.	0.908
ARID4B	SUDS3	ENSLSDP00000023019	ENSLSDP00000004429	AT-rich interactive domain-containing protein 4B.	Sin3 histone deacetylase corepressor complex component SDS3.	0.985