STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRMS1LBreast cancer metastasis-suppressor 1-like protein. (323 aa)    
Predicted Functional Partners:
ARID4A
AT-rich interactive domain-containing protein 4A.
   
 0.986
ARID4B
AT-rich interactive domain-containing protein 4B.
   
 0.986
SAP30
Histone deacetylase complex subunit SAP30.
   
 0.836
SAP30L
Histone deacetylase complex subunit SAP30L-B.
   
 0.836
SIN3B
Paired amphipathic helix protein Sin3b.
   
 0.798
SAP18
Histone deacetylase complex subunit SAP18.
     
 0.798
SIN3A
Paired amphipathic helix protein Sin3a.
   
 0.798
HDAC2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.768
HDAC8
Histone deacetylase 8.
   
 0.768
HDAC1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.768
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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