STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NKX2-1Thyroid transcription factor 1. (345 aa)    
Predicted Functional Partners:
LHX5
LIM/homeobox protein Lhx5.
    
 
 0.672
ISL1
Insulin gene enhancer protein ISL-1.
    
 
 0.672
ZBTB20
Zinc finger and BTB domain-containing protein 20.
      
 0.672
GAD2
Glutamate decarboxylase 2.
      
 0.672
FOXA1
Hepatocyte nuclear factor 3-alpha.
  
 
 0.469
ENSLSDP00000023541
annotation not available
   
  
 0.459
GATA6
Transcription factor GATA-6.
   
 0.413
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.