Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PNNPinin. (694 aa)    
Predicted Functional Partners:
RNPS1
RNA-binding protein with serine-rich domain 1.
   
 0.997
SAP18
Histone deacetylase complex subunit SAP18.
    
 0.995
PRPF4B
Serine/threonine-protein kinase PRP4.
   
 0.966
MAGOH
Protein mago nashi 2.
   
 0.966
ENSLSDP00000003462
annotation not available
   
 0.964
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
 0.963
CASC3
Protein CASC3.
    
 0.937
BCLAF1
Bcl-2-associated transcription factor 1.
   
 
 0.931
PPIG
Peptidyl-prolyl cis-trans isomerase G.
   
 0.931
PNISR
Arginine/serine-rich protein PNISR.
   
 
 0.908
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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