STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000003300annotation not available (846 aa)    
Predicted Functional Partners:
NSMCE4A
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.897
NSMCE1
Non-structural maintenance of chromosomes element 1.
    
 0.895
SMC6
Structural maintenance of chromosomes protein 6.
   
 0.885
NSMCE2
E3 SUMO-protein ligase NSE2.
    
 0.884
SMC5
Structural maintenance of chromosomes protein 5.
   
 0.884
SMC3
Structural maintenance of chromosomes protein.
    
 0.638
SMC1A
Structural maintenance of chromosomes protein 1A.
   
 0.597
SMC1B
Structural maintenance of chromosomes protein.
   
 0.597
SMC4
Structural maintenance of chromosomes protein.
    
 0.565
SMC2
Structural maintenance of chromosomes protein 2.
    
 0.565
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.