Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSF1Remodeling and spacing factor 1. (1431 aa)    
Predicted Functional Partners:
LOC110480129
Putative global transcription activator SNF2L1.
   
 0.969
SMARCA5
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
   
 0.969
BPTF
Nucleosome-remodeling factor subunit BPTF.
   
 
 0.816
CHRAC1
Chromatin accessibility complex protein 1.
     
 0.792
ARID4B
AT-rich interactive domain-containing protein 4B.
   
  
 0.760
POLE3
DNA polymerase epsilon subunit 3.
     
 0.740
CENPS
Centromere protein S.
    
 0.735
ATRX
Transcriptional regulator ATRX.
   
 0.664
VIRMA
Protein virilizer.
   
   0.649
NIPBL
Nipped-B protein.
   
 
 0.648
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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