Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSLSDP00000003383Tumor necrosis factor superfamily, member 2. (230 aa)    
Predicted Functional Partners:
LOC110480833
Tumor necrosis factor receptor superfamily member 1A.
    
 0.972
JUN
Transcription factor AP-1.
   
 0.910
NFKB1
Nuclear factor NF-kappa-B p105 subunit.
   
 
 0.907
RELA
Transcription factor p65.
     
 0.901
LOC110479725
Uncharacterized protein.
     
 0.900
CD40
Tumor necrosis factor receptor superfamily member 5.
   
 0.718
TNFRSF11B
Tumor necrosis factor receptor superfamily member 11B.
   
 0.718
IL1B
Interleukin-1; Belongs to the IL-1 family.
   
  
 0.701
PLEKHG5
Pleckstrin y domain-containing family G member 5.
    
 0.627
TNFRSF25
Tumor necrosis factor receptor superfamily member 25.
    
 0.627
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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