STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RORANuclear receptor ROR-alpha. (468 aa)    
Predicted Functional Partners:
CLOCK
Circadian locomoter output cycles protein kaput.
    
 0.784
FOXG1
Forkhead box protein G1.
   
 
 0.675
NEUROD6
Neurogenic differentiation factor.
   
  
 0.670
SAP30
Histone deacetylase complex subunit SAP30.
      
 0.667
LOC110468683
Homeobox protein EMX1.
      
 0.667
FEZF2
Fez family zinc finger protein 2.
    
 
 0.667
TBR1
T-box brain protein 1.
      
 0.667
NRIP1
Nuclear receptor-interacting protein 1.
    
 0.663
NCOR2
Nuclear receptor corepressor 2.
    
 0.608
NCOR1
Nuclear receptor corepressor 1.
    
 0.608
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.