PORCN protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PORCN

Protein-cysteine N-palmitoyltransferase porcupine. (65 aa)

Predicted Functional Partners:

CSNK2A1

0.969

CSNK2A2

0.969

RRP7A

0.960

NOL6

0.952

SUPT16H

0.910

ENSLSDP00000011537

0.903

SSRP1

0.899

TNKS1BP1

0.899

WDR36

0.899

RRP36

0.894

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSNK2A1	ENSLSDP00000011537	ENSLSDP00000008931	ENSLSDP00000011537	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	annotation not available	0.812
CSNK2A1	NOL6	ENSLSDP00000008931	ENSLSDP00000025300	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	Nucleolar protein 6.	0.830
CSNK2A1	PORCN	ENSLSDP00000008931	ENSLSDP00000003389	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	Protein-cysteine N-palmitoyltransferase porcupine.	0.969
CSNK2A1	RRP36	ENSLSDP00000008931	ENSLSDP00000022488	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	Ribosomal RNA processing protein 36.	0.692
CSNK2A1	RRP7A	ENSLSDP00000008931	ENSLSDP00000003015	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	Ribosomal RNA-processing protein 7 A.	0.859
CSNK2A1	SSRP1	ENSLSDP00000008931	ENSLSDP00000005477	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.820
CSNK2A1	SUPT16H	ENSLSDP00000008931	ENSLSDP00000011527	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	FACT complex subunit SPT16.	0.816
CSNK2A1	TNKS1BP1	ENSLSDP00000008931	ENSLSDP00000005483	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	Tankyrase-1-binding protein.	0.820
CSNK2A2	ENSLSDP00000011537	ENSLSDP00000022526	ENSLSDP00000011537	Casein kinase II subunit alpha.	annotation not available	0.812
CSNK2A2	NOL6	ENSLSDP00000022526	ENSLSDP00000025300	Casein kinase II subunit alpha.	Nucleolar protein 6.	0.830
CSNK2A2	PORCN	ENSLSDP00000022526	ENSLSDP00000003389	Casein kinase II subunit alpha.	Protein-cysteine N-palmitoyltransferase porcupine.	0.969
CSNK2A2	RRP36	ENSLSDP00000022526	ENSLSDP00000022488	Casein kinase II subunit alpha.	Ribosomal RNA processing protein 36.	0.692
CSNK2A2	RRP7A	ENSLSDP00000022526	ENSLSDP00000003015	Casein kinase II subunit alpha.	Ribosomal RNA-processing protein 7 A.	0.859
CSNK2A2	SSRP1	ENSLSDP00000022526	ENSLSDP00000005477	Casein kinase II subunit alpha.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.820
CSNK2A2	SUPT16H	ENSLSDP00000022526	ENSLSDP00000011527	Casein kinase II subunit alpha.	FACT complex subunit SPT16.	0.816
CSNK2A2	TNKS1BP1	ENSLSDP00000022526	ENSLSDP00000005483	Casein kinase II subunit alpha.	Tankyrase-1-binding protein.	0.820
ENSLSDP00000011537	CSNK2A1	ENSLSDP00000011537	ENSLSDP00000008931	annotation not available	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	0.812
ENSLSDP00000011537	CSNK2A2	ENSLSDP00000011537	ENSLSDP00000022526	annotation not available	Casein kinase II subunit alpha.	0.812
ENSLSDP00000011537	PORCN	ENSLSDP00000011537	ENSLSDP00000003389	annotation not available	Protein-cysteine N-palmitoyltransferase porcupine.	0.903
ENSLSDP00000011537	SSRP1	ENSLSDP00000011537	ENSLSDP00000005477	annotation not available	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.909