STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBX1E3 ubiquitin-protein ligase RBX1. (120 aa)    
Predicted Functional Partners:
SKP1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.999
CUL1
Cullin-1; Belongs to the cullin family.
    
 0.999
SKP2
S-phase kinase-associated protein 2.
    
 0.998
BTRC
F-box/WD repeat-containing protein 1A.
    
 0.995
DDB1
DNA damage-binding protein 1.
    
 0.993
CUL3
Cullin-3; Belongs to the cullin family.
    
 0.993
ELOC
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
   
 0.993
CUL5
Cullin-5; Belongs to the cullin family.
    
 0.993
ELOB
Transcription elongation factor B polypeptide 2.
   
 0.989
NEDD8
Ubiquitin-like protein Nedd8.
   
 0.988
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.