STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALDH6A1Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial. (539 aa)    
Predicted Functional Partners:
HIBADH
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
   
 0.991
ABAT
4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.960
DBT
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 
 0.956
ACAA1
3-ketoacyl-CoA thiolase B, peroxisomal; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.953
ECHDC1
Ethylmalonyl-CoA decarboxylase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.946
ACAA2
3-ketoacyl-CoA thiolase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.939
ALDH2
Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.
  
0.939
PCCB
Propionyl-CoA carboxylase beta chain, mitochondrial.
   
 0.939
ALDH9A1
4-trimethylaminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
0.935
EHHADH
Peroxisomal bifunctional enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.933
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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