Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VRTNVertnin. (675 aa)    
Predicted Functional Partners:
SYNDIG1L
Synapse differentiation-inducing gene protein 1-like.
      
 0.696
ABCD4
ATP-binding cassette sub-family D member 4.
      
 0.692
PDIA4
Protein disulfide-isomerase.
      
 0.585
STUM
Protein stum.
      
 0.583
NR6A1
Nuclear receptor subfamily 6 group A member 1.
    
 
 0.568
AREL1
Apoptosis-resistant E3 ubiquitin protein ligase 1.
      
 0.564
SYBU
Syntabulin.
     
 0.537
BRMS1L
Breast cancer metastasis-suppressor 1-like protein.
      
 0.536
C9orf72
Protein C9orf72.
    
   0.519
ENSLSDP00000025491
annotation not available
    
   0.519
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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