Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYNDIG1LSynapse differentiation-inducing gene protein 1-like. (241 aa)    
Predicted Functional Partners:
VRTN
Vertnin.
      
 0.696
GSG1L2
Germ cell-specific gene 1-like protein.
      
 0.588
PGGHG
Acid trehalase-like protein 1.
      
 0.578
LIN52
Protein lin-52.
      
 0.577
LARP1B
La-related protein 1B.
      
 0.576
ENSLSDP00000016652
annotation not available
      
 0.571
RASD2
GTP-binding protein Rhes.
      
 0.564
AREL1
Apoptosis-resistant E3 ubiquitin protein ligase 1.
      
 0.564
WDR92
WD repeat-containing protein 92.
      
 0.563
RIPPLY2
Protein ripply2.
      
 0.547
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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