Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CASTCalpastatin. (750 aa)    
Predicted Functional Partners:
CAPNS1
Calpain small subunit 1.
   
 0.851
CAPNS2
Calpain small subunit 2.
   
 0.851
LOC110483833
Calpain-2 catalytic subunit; Belongs to the peptidase C2 family.
   
 0.834
CAPN2_0
Calpain-2 catalytic subunit; Belongs to the peptidase C2 family.
   
 0.834
CAPN3
Calpain-3; Belongs to the peptidase C2 family.
   
 0.798
CAPN9
Calpain-9; Belongs to the peptidase C2 family.
   
 0.783
CAPN15
Calpain-15; Belongs to the peptidase C2 family.
   
 0.741
CAPN1
Calpain-1 catalytic subunit; Belongs to the peptidase C2 family.
   
 0.739
ENSLSDP00000008130
annotation not available
   
 0.739
CAPN11
Calpain-1 catalytic subunit; Belongs to the peptidase C2 family.
   
 0.739
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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