STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYPD6BLy6/PLAUR domain-containing protein 6B. (174 aa)    
Predicted Functional Partners:
RPS6KC1
Ribosomal protein S6 kinase delta-1.
   
 
 0.718
NPHP3
Nephrocystin-3.
   
 0.579
APPBP2
Amyloid protein-binding protein 2.
   
 0.579
TTC19
Tetratricopeptide repeat protein 19, mitochondrial.
   
 0.579
KLC4
Kinesin light chain 4.
   
 0.579
KLC1
Kinesin light chain 1.
   
 0.579
BEND7
BEN domain-containing protein 7.
      
 0.578
DCTN1
Dynactin subunit 1.
    
 0.578
TATDN3
Putative deoxyribonuclease TATDN3.
      
 0.570
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 
 0.563
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.