Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LYPD6Ly6/PLAUR domain-containing protein 6. (153 aa)    
Predicted Functional Partners:
LYPD6B
Ly6/PLAUR domain-containing protein 6B.
  
 
 
0.918
LOC110480824
Transient receptor potential cation channel subfamily V member 5; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.872
LOC110474232
Aromatase; Belongs to the cytochrome P450 family.
      
 0.725
CHRNA5
Neuronal acetylcholine receptor subunit alpha-5.
    
 0.701
INSYN2B
Protein FAM196B.
   
 
 0.699
LOC110472313
Neuronal acetylcholine receptor subunit alpha-7.
    
 0.693
LOC110471410
Neuronal acetylcholine receptor subunit alpha-7.
    
 0.693
CHRNB2
Neuronal acetylcholine receptor subunit beta-2.
    
 0.691
LRRC34
Leucine-rich repeat-containing protein 34.
   
  
 0.688
CHRNA4
Neuronal acetylcholine receptor subunit alpha-4.
    
 0.687
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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