Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RBM43RNA-binding protein 43. (337 aa)    
Predicted Functional Partners:
PARP9
Poly [ADP-ribose] polymerase.
   
   0.735
IQSEC3
IQ motif and SEC7 domain-containing protein 3.
      
 0.687
RNF144B
RBR-type E3 ubiquitin transferase.
      
 0.675
EFCAB11
EF-hand calcium binding domain 11.
      
 0.542
FAM162A
Protein FAM162A.
   
   0.530
PJA2
E3 ubiquitin-protein ligase Praja-2.
      
 0.468
ATP6V1H
V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
      
 0.450
YPEL5
Protein yippee-like; Belongs to the yippee family.
      
 0.450
SYBU
Syntabulin.
      
 0.411
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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