STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TNFAIP6Tumor necrosis factor-inducible gene 6 protein. (238 aa)    
Predicted Functional Partners:
PTX3
Pentraxin-related protein PTX3.
   
 
 0.783
CD44
CD44 antigen.
     
0.715
HAS2
Hyaluronan synthase 3.
   
  
 0.679
HAS3
Hyaluronan synthase 3.
   
  
 0.679
IL1B
Interleukin-1; Belongs to the IL-1 family.
   
 0.676
EREG
Proepiregulin.
      
 0.668
BTC
Probetacellulin.
      
 0.661
FNTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
      
 0.658
COL22A1
Collagen alpha-1(XXII) chain.
    
 0.635
CHRD
Chordin; Belongs to the chordin family.
    
 
 0.628
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.