STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF115E3 ubiquitin-protein ligase RNF115. (610 aa)    
Predicted Functional Partners:
TRIP12
E3 ubiquitin-protein ligase TRIP12.
   
 
 0.517
LOC110471805
Ubiquitin.
    
 0.482
UBA52
Ubiquitin-60S ribosomal protein L40.
    
 0.482
ZFAND4
AN1-type zinc finger protein 4.
   
 0.481
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.426
FUS1
Ubiquitin-60S ribosomal protein L40.
    
 0.426
UBE2K
Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.417
RXFP1
Relaxin receptor 1.
    
 0.411
LGR4
Leucine-rich repeat-containing G-protein coupled receptor 4.
    
 0.411
LGR5
Leucine-rich repeat-containing G protein-coupled receptor 5.
    
 0.411
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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