Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FCF1rRNA-processing protein FCF1. (198 aa)    
Predicted Functional Partners:
UTP11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.997
UTP3
Something about silencing protein 10 isoform X1.
   
 0.996
UTP14A
U3 small nucleolar RNA-associated protein 14 A.
   
 0.995
EMG1
Ribosomal RNA small subunit methyltransferase NEP1.
   
 0.994
UTP20
Small subunit processome component 20.
   
 0.993
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.993
NOC4L
Nucleolar complex protein 4.
   
 0.989
PDCD11
Protein RRP5.
   
 0.988
DCAF13
DDB1-and CUL4-associated factor 13.
   
 0.988
NOP14
Nucleolar protein 14.
   
 0.986
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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