STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YLPM1YLP motif-containing protein 1. (1892 aa)    
Predicted Functional Partners:
RABGEF1
Rab5 GDP/GTP exchange factor.
   
 
  0.653
RBM12B
RNA-binding protein 12B.
      
 0.574
ZNF318
Zinc finger protein 318.
   
  
 0.537
HEATR1
HEAT repeat-containing protein 1.
      
 0.508
FCF1
rRNA-processing protein FCF1.
     
 0.472
ZFAND4
AN1-type zinc finger protein 4.
   
 
  0.409
ZNF609
Zinc finger protein 609.
   
  
 0.406
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.