Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
YLPM1YLP motif-containing protein 1. (1892 aa)    
Predicted Functional Partners:
RBM12B
RNA-binding protein 12B.
   
  
 0.763
PPP1CA
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.716
PPP1CC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.716
SYNRG
Synergin gamma.
    
 
 0.713
ZNF318
Zinc finger protein 318.
   
  
 0.701
FCF1
rRNA-processing protein FCF1.
     
 0.638
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.615
UTP20
Small subunit processome component 20.
   
 
  0.573
AREL1
Apoptosis-resistant E3 ubiquitin protein ligase 1.
   
  
 0.572
BPIFB2
BPI fold containing family B member 2.
      
 0.562
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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