Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENV_6Envelope glycoprotein. (372 aa)    
Predicted Functional Partners:
LIN52
Protein lin-52.
    
 0.562
LIN54
Protein lin-54.
    
 0.552
IVNS1ABP
Influenza virus NS1A-binding.
    
 
 0.507
FANCM
Fanconi anemia group M protein.
    
 0.498
LOC110477051
Fanconi anemia group M protein.
    
 0.498
SLC1A4
Neutral amino acid transporter A.
    
 
 0.493
LIN9
Protein lin-9.
    
 0.443
MFSD2A
Sodium-dependent lysophosphatidylcholine symporter 1.
    
 
 0.425
RBBP7
Histone-binding protein RBBP7.
    
 0.417
RBBP4
Histone-binding protein RBBP4.
    
 0.417
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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