Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STX11Syntaxin-11. (288 aa)    
Predicted Functional Partners:
SNAP23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.987
VAMP8
Vesicle-associated membrane protein 8.
    
 0.934
STXBP1
Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.933
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.925
VAMP4
Vesicle-associated membrane protein 4.
    
 0.919
VAMP7
Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.
    
 0.916
STX19
Syntaxin-19; Belongs to the syntaxin family.
     
 
0.900
STX16
Syntaxin-16; Belongs to the syntaxin family.
    
 0.878
UNC13D
Protein unc-13 D.
      
 0.874
STXBP5
Syntaxin-binding protein 5.
    
 0.864
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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