Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ITGA7Integrin alpha-7. (109 aa)    
Predicted Functional Partners:
ITGB4
Integrin beta.
   
 0.983
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.964
PXN
Paxillin; Belongs to the paxillin family.
    
 0.939
FN1
Fibronectin.
     
 0.934
ITGB2
Integrin beta.
   
 0.918
SRC
Tyrosine-protein kinase.
    
 0.914
ACTN1
Alpha-actinin-1.
     
 0.902
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.876
LAMA4
Laminin subunit alpha-4.
    
 0.851
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.839
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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