Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPS6KL1Ribosomal protein S6 kinase-like 1. (641 aa)    
Predicted Functional Partners:
ZNF710
Zinc finger protein 710.
    
 
 0.745
USE1
Vesicle transport protein USE1.
    
 0.693
STX18
Syntaxin-18.
    
 0.692
RINT1
RAD50-interacting protein 1.
    
 0.687
ARL14
ADP-ribosylation factor-like protein 14; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.677
ZW10
Centromere/kinetochore protein zw10.
   
 0.651
NBAS
Neuroblastoma-amplified sequence.
   
 0.649
LOC110468874
Cytochrome c oxidase assembly factor 6.
      
 0.598
ZBTB43
Zinc finger and BTB domain-containing protein 43.
    
 
 0.524
ZC2HC1C
Zinc finger C2HC domain-containing protein 1C.
      
 0.521
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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