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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DUS1LtRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like. (486 aa)    
Predicted Functional Partners:
EPRS1
Bifunctional glutamate/proline--tRNA ligase.
  
 
 0.796
TRMT11
tRNA (Guanine(10)-N2)-methyltransferase.
   
  
 0.783
WDR36
WD repeat-containing protein 36.
   
   0.756
GNL3
Guanine nucleotide-binding protein-like 3.
   
  
 0.692
TRMT61A
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.670
UTP3
Something about silencing protein 10 isoform X1.
   
    0.651
BYSL
Bystin.
   
    0.645
RPF1
Ribosome production factor 1.
   
    0.644
NOC4L
Nucleolar complex protein 4.
   
    0.642
DCAF13
DDB1-and CUL4-associated factor 13.
   
    0.640
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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