STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC2HC1CZinc finger C2HC domain-containing protein 1C. (499 aa)    
Predicted Functional Partners:
LEO1
RNA polymerase-associated protein LEO1.
   
 
 0.944
CDC5L
Cell division cycle 5-like protein.
   
 
 0.856
U2AF2
Splicing factor U2AF subunit.
    
 
 0.783
SF1
Splicing factor 1.
    
 
 0.772
PRPF39
Pre-mRNA-processing factor 39.
    
 
 0.741
SF3B2
Splicing factor 3B subunit 2.
   
 
 0.737
ENSLSDP00000024472
annotation not available
   
 
 0.731
RBM25
RNA-binding protein 25.
   
 
 0.731
SF3B3
Splicing factor 3B subunit 3.
    
 
 0.726
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
   0.724
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.