STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RFNGBeta-1,3-N-acetylglucosaminyltransferase radical fringe. (364 aa)    
Predicted Functional Partners:
NOTCH1
Neurogenic locus notch 1.
    
 0.917
NOTCH2
Neurogenic locus notch 2.
    
 0.916
LFNG
Beta-1,3-N-acetylglucosaminyltransferase.
  
  
 
0.902
NELFB
Negative elongation factor B.
   
 0.686
POLR2H
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.605
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.559
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.552
ENSLSDP00000015676
annotation not available
    
  0.548
POLR2E
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.543
POLR2K
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
  0.543
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.