Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TBL1XR1F-box-like/WD repeat-containing protein TBL1XR1. (513 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1.
   
 0.964
SKP1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.927
APC
Adenomatous polyposis coli protein.
    
  0.906
HDAC3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.901
TBL1X
F-box-like/WD repeat-containing protein TBL1X.
  
  
 
0.900
NCOR2
Nuclear receptor corepressor 2.
   
 0.845
NCOR1
Nuclear receptor corepressor 1.
   
 0.845
SIRT1
NAD-dependent protein deacetylase sirtuin-1.
    
 0.775
KMT2E
Histone-lysine N-methyltransferase 2E.
   
 
 0.773
MECP2
Host cell factor 1.
    
 0.733
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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