Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GPC6Glypican-6; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (495 aa)    
Predicted Functional Partners:
SDC2
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.812
NOTUM
Protein notum.
    
 0.704
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.678
EXTL3
Exostosin-like 3; Belongs to the glycosyltransferase 47 family.
     
 0.658
HS2ST1
Heparan sulfate 2-O-sulfotransferase 1.
    
 0.654
FAM20B
Glycosaminoglycan xylosylkinase.
    
 0.611
GPC3
Glypican-3; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.573
GPC5
Glypican-5; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.573
LOC110484836
Glypican-5-like.
    
 0.573
SLIT2
Slit 2 protein.
    
 0.569
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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