STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARFGEF3Brefeldin A-inhibited guanine nucleotide-exchange protein 3. (2182 aa)    
Predicted Functional Partners:
PHB2
Prohibitin.
    
 
 0.753
CCDC167
Coiled-coil domain containing 167.
      
 0.570
LRRTM4
Leucine-rich repeat transmembrane neuronal protein 4.
      
 0.547
CHMP7
Charged multivesicular body protein 7.
      
 0.535
DRG2
Developmentally-regulated GTP-binding protein 2.
      
 0.529
ORC5
Origin recognition complex subunit 5.
      
 0.524
PSIP1
Lens epithelium-derived growth factor.
      
 0.463
DCBLD2
Discoidin, CUB and LCCL domain-containing protein 2.
      
 0.461
EAPP
E2F-associated phosphoprotein.
      
 0.450
PKIA
cAMP-dependent protein kinase inhibitor; Belongs to the PKI family.
      
 0.431
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.