Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CIPCCLOCK-interacting pacemaker. (373 aa)    
Predicted Functional Partners:
ARNTL2
Aryl hydrocarbon receptor nuclear translocator-like protein 2.
    
 0.973
ARNTL
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
 0.924
CLOCK
Circadian locomoter output cycles protein kaput.
    
 0.867
NPAS2
Neuronal PAS domain-containing protein 2.
    
 0.867
NPAS2_0
Neuronal PAS domain-containing protein 2.
    
 0.805
ITGB1BP1
Integrin beta-1-binding protein 1.
      
 0.703
ENSLSDP00000005662
annotation not available
      
 0.596
KCNJ1
ATP-sensitive inward rectifier potassium channel 1.
   
  
 0.569
ZMYM4
Zinc finger MYM-type protein 4.
    
   0.565
E2F6
Transcription factor E2F6.
      
 0.562
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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