STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTRAFUPF0568 protein C14orf166. (244 aa)    
Predicted Functional Partners:
DDX1
ATP-dependent RNA helicase DDX1.
   
 0.974
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.946
FAM98B
Protein FAM98B.
    
 0.915
FAM98A
Protein FAM98A.
    
 
 0.907
C2orf49
Ashwin.
    
 0.907
NIN
Ninein.
    
 
 0.569
STAU2
Double-stranded RNA-binding protein Staufen 2.
      
 0.544
DDX17
Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family.
    
 0.541
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
  
 0.541
ILF2
Interleukin enhancer-binding factor 2.
   
 
 0.523
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.