STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALYREFTHO complex subunit 4. (307 aa)    
Predicted Functional Partners:
DDX39B
Spliceosome RNA helicase Ddx39b.
   
 0.998
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.993
NXF1
Nuclear RNA export factor 1.
    
 0.993
THOC2
THO complex subunit 2.
   
 0.985
NCBP1
Nuclear cap-binding protein subunit 1.
    
 0.971
LOC110478774
E3 SUMO-protein ligase RanBP2.
   
 0.960
UPF1
Regulator of nonsense transcripts 1.
   
 
 0.958
SARNP
SAP domain-containing ribonucleoprotein.
   
 0.956
RNPS1
RNA-binding protein with serine-rich domain 1.
   
 0.955
SRRT_0
Serrate RNA effector molecule.
   
 0.954
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.