Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PLXDC1Plexin domain-containing protein 1. (289 aa)    
Predicted Functional Partners:
NRF1
Nuclear respiratory factor 1.
    
   0.515
RASD2
GTP-binding protein Rhes.
      
 0.489
MTMR10
Myotubularin-related protein 10.
      
 0.463
RLOC_00013563
Uncharacterized protein KIAA1755.
      
 0.447
TUBGCP3
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.420
MYSM1
Histone H2A deubiquitinase MYSM1.
      
 0.417
AGTRAP
Type-1 angiotensin II receptor-associated protein.
      
 0.415
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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